Man pages for CancerRxGene/gdscIC50
Pipeline for GDSC Curve Fitting
| calcNlmeStats | Calculate all statistics from dose reponse fit |
| fitModel | fitModel |
| fitModelNlmeData | Fit an nlme dose reponse model to GDSC data. |
| gdsc_example | Example raw data set from the Genomics of Drug Sensitivity in... |
| gdscIC50 | gdscIC50 |
| getIC50Matrix | Extract a matrix of IC50 values from a model statistics data... |
| getIntegral | getIntegral |
| getModelCoef | Get the statistics from a fitted nlme dose reponse model. |
| getTimeStamp | Utility function to get a time and data stamp for use in file... |
| logist3 | logist3 |
| normalizeComboData | normalizeComboData |
| normalizeData | Normalizes GDSC raw data intensities with respect to... |
| normalizeMultiComboData | normalizeMultiComboData |
| plotResponse | plotResponse |
| prepNlmeData | Converts GDSC normalized-data data frame to input format for... |
| removeFailedDrugs | Removes well positions where the drug is now considered... |
| removeMissingDrugs | Removes library drugs listed with a drug id of NA from GDSC... |
| setConcsForNlme | Adds columns 'maxc' and 'x' to GDSC normalized-data data... |
| set_package_used | Get the package name and version information |
