removeFailedDrugs: Removes well positions where the drug is now considered...

In CancerRxGene/gdscIC50: Pipeline for GDSC Curve Fitting

Removes well positions where the drug is now considered unsuitable for screening from GDSC raw data, i.e., TAG = 'FAIL'

Description

removeFailedDrugs removes rows from GDSC raw data where the TAG == 'FAIL'.

Usage

removeFailedDrugs(myDat)

Arguments

myDat

a GDSC raw data data frame.

See Also

removeMissingDrugs, normalizeData, setConcsForNlme, prepNlmeData

Examples

data("gdsc_example")
gdsc_example <- removeFailedDrugs(gdsc_example)
gdsc_example <- removeMissingDrugs(gdsc_example)
gdsc_example <- normalizeData(gdsc_example)
gdsc_example <- setConcsForNlme(gdsc_example)
nlme_data <- prepNlmeData(gdsc_example, "COSMIC_ID")
 

CancerRxGene/gdscIC50 documentation built on Oct. 6, 2022, 2:40 a.m.