calcNlmeStats: Calculate all statistics from dose reponse fit
In CancerRxGene/gdscIC50: Pipeline for GDSC Curve Fitting

calcNlmeStats

R Documentation

Calculate all statistics from dose reponse fit

Description

Calculate all statistics from dose reponse fit

Usage

calcNlmeStats(nlme_model, nlme_data)

Arguments

`nlme_model`	the results of `fitModelNlmeData`.
`nlme_data`	the nlme data frame used for fitting `prepNlmeData`.

Value

a data frame inluding IC50, AUC and RMSE.

Examples

data("gdsc_example")
gdsc_example <- removeFailedDrugs(gdsc_example)
gdsc_example <- removeMissingDrugs(gdsc_example)
gdsc_example <- normalizeData(gdsc_example)
gdsc_example <- setConcsForNlme(gdsc_example)
nlme_data <- prepNlmeData(gdsc_example, "COSMIC_ID")
## Not run: 
nlme_model <- fitModelNlmeData(nlme_data, isLargeData = F)
nlme_stats <- calcNlmeStats(nlme_model, nlme_data)

## End(Not run)

CancerRxGene/gdscIC50 documentation built on Oct. 6, 2022, 2:40 a.m.