removeMissingDrugs: Removes library drugs listed with a drug id of NA from GDSC...

In CancerRxGene/gdscIC50: Pipeline for GDSC Curve Fitting

Removes library drugs listed with a drug id of NA from GDSC raw data.

Description

In contrast to drugs with 'FAIL' tags, the drugset contained NA for the DRUG_ID, i.e., no drug id was assigned for that tag in the experimental design.

Usage

removeMissingDrugs(myDat)

Arguments

myDat

a GDSC raw data data frame.

Details

removeMissingDrugs removes rows from GDSC raw data where the DRUG_ID is NA.

See Also

removeFailedDrugs, normalizeData, setConcsForNlme, prepNlmeData

Examples

data("gdsc_example")
gdsc_example <- removeFailedDrugs(gdsc_example)
gdsc_example <- removeMissingDrugs(gdsc_example)
gdsc_example <- normalizeData(gdsc_example)
gdsc_example <- setConcsForNlme(gdsc_example)
nlme_data <- prepNlmeData(gdsc_example, "COSMIC_ID")

CancerRxGene/gdscIC50 documentation built on Oct. 6, 2022, 2:40 a.m.