Man pages for CancerRxGene/gdscIC50
Pipeline for GDSC Curve Fitting

calcNlmeStatsCalculate all statistics from dose reponse fit
fitModelfitModel
fitModelNlmeDataFit an nlme dose reponse model to GDSC data.
gdsc_exampleExample raw data set from the Genomics of Drug Sensitivity in...
gdscIC50gdscIC50
getIC50MatrixExtract a matrix of IC50 values from a model statistics data...
getIntegralgetIntegral
getModelCoefGet the statistics from a fitted nlme dose reponse model.
getTimeStampUtility function to get a time and data stamp for use in file...
logist3logist3
normalizeComboDatanormalizeComboData
normalizeDataNormalizes GDSC raw data intensities with respect to...
normalizeMultiComboDatanormalizeMultiComboData
plotResponseplotResponse
prepNlmeDataConverts GDSC normalized-data data frame to input format for...
removeFailedDrugsRemoves well positions where the drug is now considered...
removeMissingDrugsRemoves library drugs listed with a drug id of NA from GDSC...
setConcsForNlmeAdds columns 'maxc' and 'x' to GDSC normalized-data data...
set_package_usedGet the package name and version information
CancerRxGene/gdscIC50 documentation built on Nov. 13, 2019, 2:25 p.m.