Man pages for CeMOS-Mannheim/PlaquePicker
Single-object based analysis of MSI data
| binarizeAndCombine | Binarize images and combine to a single binary image |
| combineIonImages | Combine two stacks ion images into one stack of ion images |
| geometricThreshold | Unimodal threshold based on geometric method |
| get_IdxFromID | Get indicies of spectra per plaque ID |
| get_intensities | Get intensity values from ion images |
| get_mzValues | get mz values in plaquePicker result list |
| get_specIdx | Internal helper function to extract spectra indices |
| NLGF67w_mouse1_rep1 | Ion images from a NLGF mouse at age 67 weeks |
| NLGF67w_mouse1_rep1_coord | Coordinates from a NLGF mouse at age 67 weeks |
| plaquePicker | Separate stack of ion images into separated single-objects. |
| plot_venn | Generate a Venn-diagram for a plaquePicker result list |
| point2LineDist | point2LineDist |
| qcor | Quantile correction |
| tpoint | T-Point thresholding |
