plot_venn: Generate a Venn-diagram for a plaquePicker result list

In CeMOS-Mannheim/PlaquePicker: Single-object based analysis of MSI data

Generate a Venn-diagram for a plaquePicker result list

Description

Generate a Venn-diagram for a plaquePicker result list

Usage

plot_venn(
  pp,
  mzIdx = 1:3,
  mzNames = NULL,
  plot = TRUE,
  method = c("plaque", "pixel"),
  relative = TRUE
)

Arguments

pp	plaquePicker result list
mzIdx	integer vector, indicies of mz values. To get an overview of mz values try get_mzValues(). Can not be longer then 3.
mzNames	character vector, names of mz values (e.g. "ABeta1-38"). If set to NULL (default) the mz values themself will be used as names during plotting. If set to NA no names will be plotted.
plot	logical, if set to FALSE the Venn object is returned.
method	character, if set to "plaque" the Venn diagram will be based on overlapping signals per plaque. If set to "pixel" then it will be pixel-wise.
relative	logical, if set to false the number of plaques is returned instead of the percentage.

CeMOS-Mannheim/PlaquePicker documentation built on Sept. 30, 2022, 5:54 a.m.