binaryA-methods: binary heatmap for standardized feature matrix
In CoGAPS/CoGAPS: Coordinated Gene Activity in Pattern Sets
binaryA R Documentation
binary heatmap for standardized feature matrix
Description
creates a binarized heatmap of the A matrix
in which the value is 1 if the value in Amean is greater than
threshold * Asd and 0 otherwise
Usage
binaryA(object, threshold = 3)
## S4 method for signature 'CogapsResult'
binaryA(object, threshold = 3)
Arguments
object
an object of type CogapsResult
threshold
the number of standard deviations above zero
that an element of Amean must be to get a value of 1
Value
plots a heatmap of the A Matrix
Examples
data(GIST)
# to expensive to call since it plots
# binaryA(GIST.result, threshold=3)
CoGAPS/CoGAPS documentation built on April 12, 2024, 3:12 a.m.
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| binaryA | R Documentation |
binary heatmap for standardized feature matrix
Description
creates a binarized heatmap of the A matrix in which the value is 1 if the value in Amean is greater than threshold * Asd and 0 otherwise
Usage
binaryA(object, threshold = 3)
## S4 method for signature 'CogapsResult'
binaryA(object, threshold = 3)
Arguments
object |
an object of type CogapsResult |
threshold |
the number of standard deviations above zero that an element of Amean must be to get a value of 1 |
Value
plots a heatmap of the A Matrix
Examples
data(GIST)
# to expensive to call since it plots
# binaryA(GIST.result, threshold=3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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