plotmore: plotmore
In ConesaLab/MORE: Multi-Omics REgulation (MORE)

plotmore

R Documentation

plotmore

Description

plotmore Graphical representation of the relationship between genes and regulators.

Usage

plotmore(
  output,
  gene,
  regulator = NULL,
  simplify = FALSE,
  reguValues = NULL,
  plotPerOmic = FALSE,
  gene.col = 1,
  regu.col = NULL,
  order = TRUE,
  xlab = "",
  cont.var = NULL,
  cond2plot = NULL,
  ...
)

Arguments

`output`	Output object of MORE main function.
`gene`	ID of the gene to be plotted.
`regulator`	ID of the regulator to be plotted. If NULL (default), all regulators of the gene are plotted.
`reguValues`	Vector containing the values of a regulator. If NULL (default), these values are taken from the output object as long as they are available.
`plotPerOmic`	If TRUE, all the relevant/significant regulators of the given gene and the same omic are plotted in the same graph. If FALSE (default), each regulator is plotted in a separate plot.
`gene.col`	Color to plot the gene. By default, 1 (black).
`order`	If TRUE (default), the values in X-axis are ordered.
`xlab`	Label for the X-axis.
`cont.var`	Vector with length equal to the number of observations in data, which optionally may contain the values of the numerical variable (e.g. time) to be plotted on the X-axis. By default, NULL.
`cond2plot`	Vector or factor indicating the experimental group of each value to represent. If NULL (default), the labels are taken from the experimental design matrix.
`regul.col`	Color to plot the regulator. If NULL (default), a color will be assigned by the function, that will be different for each regulatory omic.