Files in ConesaLab/acorde
Isoform co-usage networks from single-cell RNA-seq data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/cell_type_DE.R
R/cluster_refinement.R
R/cluster_visualization.R
R/clustering.R
R/coDIU_genes.R
R/coexpr_simulation.R
R/data.R
R/filtering.R
R/fromList.R
R/percentile_cor.R
README.md
data/consensus_DE_set.rda
data/gene_tr_ID.rda
data/metadata.rda
data/symsim_sce.rda
data/tasic.rda
images/DIU-definition.png
images/acorde_pipeline-small.png
images/acorde_pipeline.png
images/coDIU-definition.png
images/percentile_correlations-small.png
inst/REFERENCES.bib
man/calculate_cluster_ctmeans.Rd
man/calculate_cluster_profile.Rd
man/cell_type_DE.Rd
man/check_gene_pair.Rd
man/cluster_isoforms.Rd
man/consensus_DE_set.Rd
man/detect_low_expression.Rd
man/detect_minor_isoforms.Rd
man/detect_sparse.Rd
man/expand_clusters.Rd
man/filter_clusters.Rd
man/find_codiu_genes.Rd
man/fromList.Rd
man/gene_tr_ID.Rd
man/keep_DIU.Rd
man/make_design.Rd
man/make_test.Rd
man/merge_clusters.Rd
man/metadata.Rd
man/percentile_cor.Rd
man/percentile_expr.Rd
man/plot_cluster_ctmeans.Rd
man/plot_cluster_profile.Rd
man/run_downsampling.Rd
man/scale_isoforms.Rd
man/shuffle_group_matrix.Rd
man/simulate_coexpression.Rd
man/symsim_sce.Rd
man/tasic.Rd
man/test_codiu_genes.Rd
vignettes/.gitignore
vignettes/acorde-pipeline.Rmd
vignettes/acorde-pipeline.html
vignettes/coexpr-simulation.Rmd
vignettes/coexpr-simulation.html
