tasic: Tasic et al. 2016 expression matrix

In ConesaLab/acorde: Isoform co-usage networks from single-cell RNA-seq data

Tasic et al. 2016 expression matrix

Description

Mouse neural single-cell RNA-Seq data set containing isoform-level expression. Expression matrix obtained using a bulk long-read transcriptome and single-cell short-reads obtained from Tasic et al. 2016 (see reference below).

Usage

tasic

Format

A tibble containing single-cell isoform counts for 1591 cells and 16240 isoforms, represented as columns and rows, respectively. Isoform identifiers are defined the transcript_id column. The data has been length-normalized and quality filtered as detailed in Arzalluz-Luque et al. (see reference below).

References

Long read transcriptome definition details can be found in the methods section of Arzalluz-Luque et al.:

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Arzalluz-Luque2021acorde

Public single-cell RNA-Seq data (Smart-Seq2) from mouse visual cortex was obtained from Tasic et al.:

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Tasic2016aacorde

ConesaLab/acorde documentation built on Feb. 25, 2024, 4:16 a.m.