symsim_sce: SymSim simulated dataset
In ConesaLab/acorde: Isoform co-usage networks from single-cell RNA-seq data
symsim_sce R Documentation
SymSim simulated dataset
Description
A SingleCellExperiment object containing the results of
simulating data with SymSim, as described in the co-expression simulation
vignette in acorde. This dataset contains 1000 cells divided equally
into 8 cell types, and 8000 genes/features.
Usage
symsim_sce
Format
A SingleCellExperiment object containing two assays, counts
and logcounts, where log-transformed counts are included for PCA
visualization, among other functions. The colData slot contains a
two-column dataframe with Cell and Group identifiers. PCA
is already calculated and stored in the reducedDimNames slot.
ConesaLab/acorde documentation built on Feb. 25, 2024, 4:16 a.m.
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| symsim_sce | R Documentation |
SymSim simulated dataset
Description
A SingleCellExperiment object containing the results of
simulating data with SymSim, as described in the co-expression simulation
vignette in acorde. This dataset contains 1000 cells divided equally
into 8 cell types, and 8000 genes/features.
Usage
symsim_sce
Format
A SingleCellExperiment object containing two assays, counts
and logcounts, where log-transformed counts are included for PCA
visualization, among other functions. The colData slot contains a
two-column dataframe with Cell and Group identifiers. PCA
is already calculated and stored in the reducedDimNames slot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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