consensus_DE_set: Isoform Differential Expression analysis results

In ConesaLab/acorde: Isoform co-usage networks from single-cell RNA-seq data

Isoform Differential Expression analysis results

Description

This object contains a list of differentially expressed isoforms obtained after x50 downsamplping runs combined with Differential Expression testing using edgeR and DESeq2. Given potential variability across DE method runs and to ensure the reproducibility of the results in Arzalluz-Luque et al. (see refs.), we provide the original results used in the manuscript.

Usage

consensus_DE_set

Format

A tibble containing a single column, named transcript. This transcript list is used to filter the tasic expression matrix to retain only consistently DE transcript isoforms.

References

\insertRef

Arzalluz-Luque2021acorde

ConesaLab/acorde documentation built on Feb. 25, 2024, 4:16 a.m.