check_gene_pair: Check isoform co-expression patterns for a gene pair across...

In ConesaLab/acorde: Isoform co-usage networks from single-cell RNA-seq data

Check isoform co-expression patterns for a gene pair across clusters

Description

This function is called internally by find_codiu_genes to iteratively check each gene pair for isoform co-expression.

Usage

check_gene_pair(pair, intersections)

Arguments

pair	A character vector of length 2 containing gene IDs for a candidate gene pair.
intersections	A data.frame including binary presence/absence patterns for genes across clusters. Typically, the output of fromList.

Value

A logical indicating whether the pair of genes under evaluation presents isoform co-expression across any of the analyzed clusters.

ConesaLab/acorde documentation built on Feb. 25, 2024, 4:16 a.m.