ATACTrack: ATACTrack function

In CostaLab/MOJITOO: MOJITOO: (M)ulti-m(O)dal (J)oint (I)ntegra(T)ion of c(O)mp(O)nents

ATACTrack function

Description

Top positive&negative peaks of a CC

Usage

ATACTrack(
  object,
  CC = 1,
  group.by = "celltype",
  bigwig.file.list = list(),
  MOJITOO.reduction = "MOJITOO",
  Peak.assay = "Peaks",
  Peaks = NULL,
  gene.model = NULL,
  cols = (ggsci::pal_igv())(51),
  ylim.datatrack = c(0, 16),
  fontsize.geneAxis = 5,
  fontsize.geneRegion = 10,
  fontsize.datatrack = 8,
  show.legend = T,
  genome = "hg38"
)

Arguments

genome

hg19 h38 mm9 mm10

Value

A grid.gTree, use grid.draw to plot

Examples

ATACTrack()

CostaLab/MOJITOO documentation built on Oct. 17, 2023, 12:06 a.m.