GeneCCDimPlot: GeneCCDimPlot function

In CostaLab/MOJITOO: MOJITOO: (M)ulti-m(O)dal (J)oint (I)ntegra(T)ion of c(O)mp(O)nents

GeneCCDimPlot function

Description

CC expression DimPlot

CC expression DimPlot

CC expression DimPlot

Usage

GeneCCDimPlot(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "RNA",
  umap = "MOJITOO_UMAP",
  MOJITOO.reduction = "MOJITOO",
  raster = F,
  combine = F,
  cols = c("blue", "grey", "red"),
  ...
)

## S3 method for class 'Seurat'
GeneCCDimPlot(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "RNA",
  umap = "MOJITOO_UMAP",
  MOJITOO.reduction = "MOJITOO",
  raster = F,
  combine = F,
  cols = c("blue", "grey", "red"),
  ...
)

## S3 method for class 'ArchRProject'
GeneCCDimPlot(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "RNA",
  umap = "MOJITOO_UMAP",
  MOJITOO.reduction = "MOJITOO",
  raster = F,
  combine = F,
  cols = c("blue", "grey", "red"),
  ...
)

Arguments

object	ArchRProject Object
reduction.list	reduction list
dims.list	dims list
reduction.name	reduction name

Examples

GeneCCDimPlot()
GeneCCDimPlot()
GeneCCDimPlot()

CostaLab/MOJITOO documentation built on Oct. 17, 2023, 12:06 a.m.