GeneCCHeatmap.Seurat: GeneCCHeatmap function

In CostaLab/MOJITOO: MOJITOO: (M)ulti-m(O)dal (J)oint (I)ntegra(T)ion of c(O)mp(O)nents

GeneCCHeatmap function

Description

Top positive&negative gene expression of a CC heatmap

Top positive&negative gene expression of a CC heatmap

Top positive&negative gene expression of a CC heatmap

Usage

GeneCCHeatmap(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "GeneExpressionMatrix",
  colorbar.group = "celltype",
  MOJITOO.reduction = "MOJITOO",
  filter.mito = T,
  filter.ribo = T,
  topN = 10,
  raster = T,
  cols = (ggsci::pal_igv())(51),
  rerun = T,
  ...
)

## S3 method for class 'Seurat'
GeneCCHeatmap(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "RNA",
  colorbar.group = "celltype",
  MOJITOO.reduction = "MOJITOO",
  filter.mito = T,
  filter.ribo = T,
  topN = 10,
  raster = T,
  cols = (ggsci::pal_igv())(51),
  rerun = T,
  ...
)

## S3 method for class 'ArchRProject'
GeneCCHeatmap(
  object,
  CCsToPlot = 1:3,
  RNA.assay = "GeneExpressionMatrix",
  colorbar.group = "celltype",
  MOJITOO.reduction = "MOJITOO",
  filter.mito = T,
  filter.ribo = T,
  topN = 10,
  raster = T,
  cols = (ggsci::pal_igv())(51),
  rerun = T,
  ...
)

Arguments

object	ArchR Object
reduction.list	reduction list
dims.list	dims list
reduction.name	reduction name

Examples

GeneCCHeatmap()
GeneCCHeatmap()
GeneCCHeatmap()

CostaLab/MOJITOO documentation built on Oct. 17, 2023, 12:06 a.m.