Files in CostaLab/scMarkerDetect
Detect marker panel from scRNA-seq profile
.Rbuildignore
.Rproj.user/FA7D2849/sources/prop/1E9159A2
.Rproj.user/FA7D2849/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
Example_MCA_Spleen.Rmd
Example_MCA_Spleen.html
Example_human-PBMC&lung.Rmd
Example_human_BM.Rmd
Example_human_PBMC.Rmd
LICENSE
NAMESPACE
R/Cell_markers.ident.R
R/sysdata.rda
README.md
Self_DB.csv
activeSVM_testing.html
data/ICC.rda
data/ICC_mouse.rda
data/IHC.rda
data/IHC_mouse.rda
data/all_genes.rda
data/chunk.template.rda
data/comet_genes.rda
data/flow_mouse.rda
data/mca.spleen.rda
data/msc_genes.rda
data/setup.template.rda
data/surface.genes.rda
docs/.nojekyll
docs/404.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/vignette.html
docs/articles/vignette_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/vignette_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/vignette_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/vignette_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/vignette_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/vignette_files/datatables-binding-0.17/datatables.js
docs/articles/vignette_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/vignette_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/vignette_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/vignette_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/vignette_files/dt-ext-buttons-1.10.20/css/buttons.dataTables.min.css
docs/articles/vignette_files/dt-ext-buttons-1.10.20/js/buttons.colVis.min.js
docs/articles/vignette_files/dt-ext-buttons-1.10.20/js/buttons.flash.min.js
docs/articles/vignette_files/dt-ext-buttons-1.10.20/js/buttons.html5.min.js
docs/articles/vignette_files/dt-ext-buttons-1.10.20/js/buttons.print.min.js
docs/articles/vignette_files/dt-ext-buttons-1.10.20/js/dataTables.buttons.min.js
docs/articles/vignette_files/figure-html/unnamed-chunk-3-1.png
docs/articles/vignette_files/figure-html/unnamed-chunk-4-1.png
docs/articles/vignette_files/figure-html/unnamed-chunk-5-1.png
docs/articles/vignette_files/figure-html/unnamed-chunk-6-1.png
docs/articles/vignette_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/vignette_files/jszip-1.10.20/jszip.min.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Detect_single_marker.html
docs/reference/Detect_single_marker_all.html
docs/reference/firstup.html
docs/reference/generate_report.html
docs/reference/generate_report_rmd.html
docs/reference/get_antibody.html
docs/reference/get_gene_score.html
docs/reference/get_gene_score_neg.fbeta.html
docs/reference/get_gene_score_neg.html
docs/reference/get_gene_score_pos.fbeta.html
docs/reference/get_gene_score_pos.html
docs/reference/get_original_alpha.html
docs/reference/get_split_pos_pos.html
docs/reference/index.html
docs/reference/intersect.ignorecase.html
docs/reference/makeid.html
docs/reference/normalize.html
docs/reference/plot_filter_stepbystep_first2.html
docs/reference/plot_ridge.html
docs/sitemap.xml
man/Detect_single_marker.Rd
man/Detect_single_marker_all.Rd
man/firstup.Rd
man/generate_report.Rd
man/generate_report_rmd.Rd
man/get_antibody.Rd
man/get_gene_score.Rd
man/get_gene_score_neg.Rd
man/get_gene_score_neg.fbeta.Rd
man/get_gene_score_pos.Rd
man/get_gene_score_pos.fbeta.Rd
man/get_original_alpha.Rd
man/get_split_pos_pos.Rd
man/intersect.ignorecase.Rd
man/makeid.Rd
man/normalize.Rd
man/plot_filter_stepbystep_first2.Rd
man/plot_ridge.Rd
vignettes/.gitignore
vignettes/vignette.Rmd
