Files in CshlSiepelLab/nascentRNASim
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/archetype_archives.R
R/data_handling.R
R/misc_distributions.R
R/transcript_archetypes.R
R/transcript_processing.R
R/txdb_handling.R
R/type_checkers.R
README.md
inst/extdata/archetype_sets/celastrol_dukler2017/README
inst/extdata/archetype_sets/celastrol_dukler2017/celastrol_dukler2017_archetypes.bed
inst/extdata/archetype_sets/celastrol_dukler2017/celastrol_dukler2017_minus.bw
inst/extdata/archetype_sets/celastrol_dukler2017/celastrol_dukler2017_plus.bw
inst/extdata/gtex_expression_kernels/skeletal_muscle.kernel.txt.gz
man/annotate_loci.Rd
man/assert_chromosome_exists.Rd
man/cache_create_dir.Rd
man/cache_defaults.Rd
man/cache_get_dir.Rd
man/cache_set_dir.Rd
man/download_txdb.Rd
man/estimate_abundance.Rd
man/filter_annotations.Rd
man/group_transcripts.Rd
man/inactive_regions.Rd
man/is.GRanges.Rd
man/is.GRangesList.Rd
man/list_archetype_set.Rd
man/list_cached_txdb.Rd
man/list_gtex_density.Rd
man/load_archetype_set.Rd
man/load_txdb.Rd
man/loci_property_sim.Rd
man/profile_views-class.Rd
man/profile_views.Rd
man/resample_reads.Rd
man/rgtex.Rd
man/rzexp.Rd
man/save_txdb.Rd
man/show-profile_views-method.Rd
man/simulate_abundances.Rd
man/simulate_annotations.Rd
man/simulate_data.Rd
man/split_path.Rd
man/store_reduced_archetype_bw.Rd
man/sub-profile_views-numeric-missing-ANY-method.Rd
man/transcript_archetypes-class.Rd
man/transcript_archetypes.Rd
man/view_archetype.Rd
man/view_available_txdb.Rd
vignettes/.gitignore
vignettes/first_simuations.Rmd
vignettes/rsconnect/documents/first_simuations.Rmd/rpubs.com/rpubs/Document.dcf
