transcript_archetypes-class: Class transcript_archetypes

In CshlSiepelLab/nascentRNASim:

Description

Class transcript_archetypes holds lists of empirical transcript archetypes and the matched data. Empirical profiles for flanking regions (width is user defined) are included in the archetypes. Synthetic genome annotations, count data, and transcript abundances can be simulated from this object and exported to standard genomic formats.

Slots

transcripts

a GRanges-class that holds all the transcript coordinates

data

a list containing run-length encodings of counts for both the sense and anti-sense strand for the transcripts and their flanking regions

abundance_estimate

abundance estimates for each transcript

configs

a list of the configuration options used to generate this object

CshlSiepelLab/nascentRNASim documentation built on Dec. 17, 2021, 3:08 p.m.