Man pages for CshlSiepelLab/nascentRNASim
| annotate_loci | Generate transcript annotations |
| assert_chromosome_exists | Assert chromosome exists |
| cache_create_dir | Create local cache |
| cache_defaults | Create cache defaults |
| cache_get_dir | Get local cache path |
| cache_set_dir | Set local cache path |
| download_txdb | Download transcript model from biomart |
| estimate_abundance | Estimate abundance |
| filter_annotations | Filter annotations |
| group_transcripts | Group transcripts |
| inactive_regions | Get background regions |
| is.GRanges | is.GRanges |
| is.GRangesList | is.GRangesList |
| list_archetype_set | List available archetype sets |
| list_cached_txdb | View cache |
| list_gtex_density | List available density estimates from GTEx |
| load_archetype_set | Load archetype set included in package |
| load_txdb | Load txdb from cache |
| loci_property_sim | Simulate loci level properties |
| profile_views | extract regions from file |
| profile_views-class | Class profile_views |
| resample_reads | Resample reads from 5' coverage vector |
| rgtex | Sample from density estimates from GTEx |
| rzexp | Simulate from a zero-inflated exponential distribution |
| save_txdb | Cache a TxDb |
| show-profile_views-method | show |
| simulate_abundances | Simulate abundance values |
| simulate_annotations | Simulate annotations |
| simulate_data | Simulate read data |
| split_path | Split path |
| store_reduced_archetype_bw | Save an archetype set |
| sub-profile_views-numeric-missing-ANY-method | subsetting |
| transcript_archetypes | transcript_archetypes |
| transcript_archetypes-class | Class transcript_archetypes |
| view_archetype | View archetype |
| view_available_txdb | Retrieve ensembl biomart |
