ABI_template_align: Download and register to ABI 50um template

In DJFernandes/ABIgeneRMINC: Read, Write, and Analyzing Allen Gene Expression Raw Data

Download and register to ABI 50um template

Description

Downloads ABI 50um template and registers minc data to it

Usage

ABI_template_align(
  anatomy_template,
  anatomy_mask,
  allen_ccf3v_template = NULL,
  allen_ccf3v_mask = NULL,
  xfm_files_dir = tempdir(),
  keep_files = F
)

Arguments

anatomy_template	minc data to move
anatomy_mask	mask used in the registration
allen_ccf3v_template	Path to the ABI template. If NULL, ABI 50um template is downloaded and stored to a temporary file. If path does not point to an existing file, the template is downloaded and written here. If path points to an existing file, the file is used as the target for registration
xfm_files_dir	Directory to store the XFM transformation files. If NULL, a temporary directory is used.
keep_files	If TRUE, pathnames to ABI template and XFM directories will be echoed. Its User's responsibility make sure these files are in a safe location.

Value

XFM transformation filepath

DJFernandes/ABIgeneRMINC documentation built on March 21, 2022, 12:05 p.m.