disease_ontology: Disease Ontology

In DJFernandes/ABIgeneRMINC: Read, Write, and Analyzing Allen Gene Expression Raw Data

Disease Ontology

Description

Finds DO of a gene set

Usage

disease_ontology(
  genes,
  organism = "mouse",
  update_info = FALSE,
  api_key = NULL,
  parallel = NULL,
  conf_file = getOption("RMINC_BATCH_CONF")
)

Arguments

parallel

how many processors to run on (default=single processor). Specified as a two element vector, with the first element corresponding to the type of parallelization, and the second to the number of processors to use. For local running set the first element to "local" or "snowfall" for back-compatibility, anything else will be run with batchtools see pMincApply Leaving this argument NULL runs sequentially.

conf_file

A batchtools configuration file defaulting to getOption("RMINC_BATCH_CONF").

Value

tibble with homologous genes

DJFernandes/ABIgeneRMINC documentation built on March 21, 2022, 12:05 p.m.