GOrilla_run: Run Gene Ontology enrichment analysis on GOrilla

In DJFernandes/ABIgeneRMINC: Read, Write, and Analyzing Allen Gene Expression Raw Data

Run Gene Ontology enrichment analysis on GOrilla

Description

Run Gene Ontology enrichment analysis on GOrilla

Usage

GOrilla_run(target.genes, background.genes, tmpdir = tempdir())

Arguments

target.genes	genes of interest
background.genes	pool of genes from which the target genes were selected
tmpdir	path to directory where files will be stored

Value

data frame of enriched process ontologies, significance from hypergeometric test (with FDR), and associated genes

Examples

# Target list of genes
target.genes = readLines(system.file('extdata/GOtest/target.txt',package="ABIgeneRMINC"))
# Background genes
background.genes = readLines(system.file('extdata/GOtest/background.txt',package="ABIgeneRMINC"))

# Run GOrilla
go_results = GOrilla_run(target.genes, background.genes)

DJFernandes/ABIgeneRMINC documentation built on March 21, 2022, 12:05 p.m.