checkAlignmentFile: Manually check the alignment of consensus sequences using an...

In DKMS-LSL/dr2s: Dual redundant reference sequencing

Description

Manually check the alignment of consensus sequences using an editor.

Usage

checkAlignmentFile(
  x,
  map = "mapFinal",
  where = 0,
  editor = "xdg-open",
  openEditor = TRUE
)

Arguments

x	A DR2S object.
map	Which stage of mapping to use. Either "mapFinal" (default) or "mapIter".
where	Where to focus with the editor.
editor	Which editor to use. Either "xdg-open" (default) for standard system editor, "subl" for sublime, "gvim" or "gedit"
openEditor	should the editor be opened or just create the files?

Value

The path to the newliy created alignment file to check the polished consensus sequences.

DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.