remapAlignment: Remap an allele to the checked consensus

In DKMS-LSL/dr2s: Dual redundant reference sequencing

Description

Remap an allele to the checked consensus

Usage

remapAlignment(
  x,
  hptype,
  report = FALSE,
  createIgv = TRUE,
  threshold = NULL,
  ...
)

Arguments

x	A DR2S object.
hptype	The allele to remap
report	Should the function read a reference from the report folder? Only internal parameter.

Value

Returns the updated DR2S object.

Creates an executable bash file for inspecting the mapping with IGV

See Also

Other DR2S mapper functions: cache(), clear(), createDR2SConf(), mapFinal(), mapInit(), mapIter(), partitionLongreads(), reportCheckedConsensus(), report()

DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.