hammingDist: Construct a hamming distance matrix from an aligned...
In DKMS-LSL/dr2s: Dual redundant reference sequencing
Description
Usage
Arguments
Details
Value
Examples
Description
Construct a hamming distance matrix from an aligned DNAStringSet
Usage
1
hammingDist(x)
Arguments
x
DNAStringset with aligned sequences
Details
consmat: a matrix with positions row names and nucleotides as
column manes.
A consmat object includes the attributes:
- n
<integer>; Number of reads per row.
- freq
<logical>; Is it a frequency matrix or a count matrix.
- offsetBases
<integer>; Offset
- insertions
<integer>; Insertions
Value
A consmat object.
Examples
1
###
DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.
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Description Usage Arguments Details Value Examples
Description
Construct a hamming distance matrix from an aligned DNAStringSet
Usage
1 | hammingDist(x)
|
Arguments
x |
DNAStringset with aligned sequences |
Details
consmat: a matrix with positions row names and nucleotides as
column manes.
A consmat object includes the attributes:
- n
<integer>; Number of reads per row.
- freq
<logical>; Is it a frequency matrix or a count matrix.
- offsetBases
<integer>; Offset
- insertions
<integer>; Insertions
Value
A consmat object.
Examples
1 | ###
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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