reportCheckedConsensus: Report haplotype consensus files as verified
In DKMS-LSL/dr2s: Dual redundant reference sequencing
Description
Usage
Arguments
Details
Value
See Also
Description
Report haplotype consensus files as verified
Usage
1
reportCheckedConsensus(x, map = "mapFinal")
Arguments
x
A DR2S object.
map
Which mapping do we want to update.
Details
reportCheckedConsensus will create a checked directory
containing the consensus sequences
{A,B}.{readtype}.{mapper}.checked.fa
and a html alignment file aln.{readtype}.{mapper}.checked.html.
Value
Side effect
See Also
Other DR2S mapper functions:
cache(),
clear(),
createDR2SConf(),
mapFinal(),
mapInit(),
mapIter(),
partitionLongreads(),
remapAlignment(),
report()
DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.
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Description Usage Arguments Details Value See Also
Description
Report haplotype consensus files as verified
Usage
1 | reportCheckedConsensus(x, map = "mapFinal")
|
Arguments
x |
A |
map |
Which mapping do we want to update. |
Details
reportCheckedConsensus will create a checked directory
containing the consensus sequences
{A,B}.{readtype}.{mapper}.checked.fa
and a html alignment file aln.{readtype}.{mapper}.checked.html.
Value
Side effect
See Also
Other DR2S mapper functions:
cache(),
clear(),
createDR2SConf(),
mapFinal(),
mapInit(),
mapIter(),
partitionLongreads(),
remapAlignment(),
report()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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