liftOver_motifMap: Convenience function for running liftOver on a MotifMap BED...
In DarwinAwardWinner/rctutils: Utility functions by Ryan C. Thompson

liftOver_motifMap

R Documentation

Convenience function for running liftOver on a MotifMap BED file

This function is a shortcut for calling read_motifmap(), liftOverLax(), and then write_motifmap().

liftOver_motifMap(infile, chainfile, outfile, allow.gap = 2, ...)

`infile`	The input file to read with `read_motifmap()`.
`chainfile`	The chain file to use for the liftover process, to be read with `rtracklayer::import.chain()`.
`outfile`	The output file to write with `write_motifmap()`.
`allow.gap, ...`	These arguments are passed to `liftOverLax()`. Note that only features that remain contiguous after lifting over are written to the output file. The rest are discarded.