plot_values_by_plate: Plot an image of the raw intensities for a plate

In DavidQuigley/HTDoseResponseCurve: Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms

Description

Plot an image of the raw intensities for a plate

Usage

plot_values_by_plate(plate, hour = NA, color_bounds = c(0, 100),
  color_palatte = c("white", "#fdbb84", "#e34a33"), main = "", cex = 1.5)

Arguments

plate	data frame in format matching that produced by read_incucyte_from_excel.
hour	hour of the experiment to plot. Defaults to NA, plotting all values. If more than one time point has been stored for the data in plate, passing NA will result in an error.
color_bounds	values at which to draw coldest and hottest colors, defaults to c(0, 100)
color_palatte	colors to use for cold-middle-hot, defaults to c("white", "#fdbb84","#e34a33")
main	title to draw above plot, defaults to ""
cex	point size, defaults to 1.5

Value

none

Examples

plate_1 = create_empty_plate( 6, hour=0, plate_id="plate_1")
plate_1[1,1:3] = c(100, 40, 10 )
plate_1[2,1:3] = c(90, 70, 30 )
plot_values_by_plate( plate_1, hour=0 )
# real-world example
pkg = "HTDoseResponseCurve"
fn_data = system.file("extdata", "sample_data_384.xlsx", package = pkg)
plate_data = read_plates_from_Incucyte_export( fn_data, "p1", 
                                               number_of_wells=384)
plot_values_by_plate(plate_data, hour=96)

DavidQuigley/HTDoseResponseCurve documentation built on Jan. 23, 2021, 5:10 a.m.