DavisLaboratory/standR: Spatial transcriptome analyses of Nanostring's DSP data in R
standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. standR allows data inspection, quality control, normalization, batch correction and evaluation with informative visualizations.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DifferentialExpression ExperimentHubSoftware GeneExpression Normalization QualityControl Spatial Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.11.1 |
| URL | https://github.com/DavisLaboratory/standR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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