findNCGs: Get negative control genes from each batch of the data

View source: R/batchCorrection.R

findNCGsR Documentation

Get negative control genes from each batch of the data

Description

Get negative control genes from each batch of the data

Usage

findNCGs(spe, n_assay = 2, batch_name = "SlideName", top_n = 200)

Arguments

spe

A Spatial Experiment object.

n_assay

Integer to indicate the nth count table in the assay(spe) to be used.

batch_name

Column name indicating batches.

top_n

Integer indicate how many genes to be included as negative control genes.

Value

A Spatial Experiment object, conatining negative control genes in the metadata.

Examples

data("dkd_spe_subset")

spe <- findNCGs(dkd_spe_subset, top_n = 100)
S4Vectors::metadata(spe)$NCGs


DavisLaboratory/standR documentation built on Sept. 8, 2024, 9:57 p.m.