API for DavisLaboratory/standR
Spatial transcriptome analyses of Nanostring's DSP data in R
| Global functions | |
|---|---|
| .drawPCA_se | Source code |
| .plotMDS_se | Source code |
| RUV4_upgrade | Source code |
| addPerROIQC | Man page Source code |
| addSampleAnnot | Source code |
| bhuvad_theme | Source code |
| caculate_coor_end | Source code |
| calNormCount | Source code |
| calcPCA | Source code |
| checkPackages | Source code |
| checkPrecomputedMDS | Source code |
| checkPrecomputedPCA | Source code |
| computeClusterEvalStats | Man page Source code |
| ctl2logi | Source code |
| dkd_spe_subset | Man page |
| drawPCA | Man page |
| drawPCA,DGEList-method | Man page |
| drawPCA,ExpressionSet-method | Man page |
| drawPCA,SingleCellExperiment-method | Man page |
| drawPCA,SpatialExperiment-method | Man page |
| drawPCA,SummarizedExperiment-method | Man page |
| expand.grid.rmdup | Source code |
| findBestK | Man page |
| findNCGs | Man page Source code |
| geomxBatchCorrection | Man page |
| geomxNorm | Man page Source code |
| geomx_import_fun | Source code |
| int_breaks | Source code |
| orderSamples | Source code |
| pdataMDS_intl | Source code |
| pdataPC_intl | Source code |
| pdataRLE_intl | Source code |
| plotClusterEvalStats | Man page Source code |
| plotDR | Man page |
| plotDR,SingleCellExperiment-method | Man page |
| plotDR,SpatialExperiment-method | Man page |
| plotDR_intl | Source code |
| plotGeneQC | Man page Source code |
| plotMDS | Man page |
| plotMDS,DGEList-method | Man page |
| plotMDS,ExpressionSet-method | Man page |
| plotMDS,SingleCellExperiment-method | Man page |
| plotMDS,SpatialExperiment-method | Man page |
| plotMDS,SummarizedExperiment-method | Man page |
| plotPCAbiplot | Man page Source code |
| plotPairPCA | Man page Source code |
| plotRLExpr | Man page |
| plotRLExpr,DGEList-method | Man page |
| plotRLExpr,ExpressionSet-method | Man page |
| plotRLExpr,SummarizedExperiment-method | Man page |
| plotRLExpr_intl | Source code |
| plotROIQC | Man page Source code |
| plotRmGenes | Source code |
| plotSampleInfo | Man page Source code |
| plotScreePCA | Man page Source code |
| prepareSpatialDecon | Man page Source code |
| readGeoMx | Man page Source code |
| readGeoMxFromDGE | Man page Source code |
| rpkm2tpm | Source code |
| spe2dge | Man page |
| standR | Man page |
| standR-package | Man page |
