DavisLaboratory/standR: Spatial transcriptome analyses of Nanostring's DSP data in R

standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. standR allows data inspection, quality control, normalization, batch correction and evaluation with informative visualizations.

Getting started

Package details

Bioconductor views DifferentialExpression ExperimentHubSoftware GeneExpression Normalization QualityControl Spatial Transcriptomics
Maintainer
LicenseMIT + file LICENSE
Version1.9.3
URL https://github.com/DavisLaboratory/standR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("DavisLaboratory/standR")
DavisLaboratory/standR documentation built on Sept. 8, 2024, 9:57 p.m.