spe2dge: Transfer SpatialExperiment object into DGEList object for DE...
In DavisLaboratory/standR: Spatial transcriptome analyses of Nanostring's DSP data in R
spe2dge R Documentation
Transfer SpatialExperiment object into DGEList object for DE analysis
Description
Transfer SpatialExperiment object into DGEList object for DE analysis
Usage
spe2dge(spe)
Arguments
spe
SpatialExperiment object.
Value
A DGEList.
Examples
data("dkd_spe_subset")
spe_tmm <- geomxNorm(dkd_spe_subset, method = "TMM")
dge <- spe2dge(spe_tmm)
DavisLaboratory/standR documentation built on March 28, 2024, 4:23 a.m.
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| spe2dge | R Documentation |
Transfer SpatialExperiment object into DGEList object for DE analysis
Description
Transfer SpatialExperiment object into DGEList object for DE analysis
Usage
spe2dge(spe)
Arguments
spe |
SpatialExperiment object. |
Value
A DGEList.
Examples
data("dkd_spe_subset")
spe_tmm <- geomxNorm(dkd_spe_subset, method = "TMM")
dge <- spe2dge(spe_tmm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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