Files in DavisLaboratory/standR
Spatial transcriptome analyses of Nanostring's DSP data in R

.DS_Store

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/RUV4_upgrade.R R/addQCstat.R R/batchCorrection.R R/geomx_import_data.R R/normalisation.R R/pcaOtherPlotting.R R/plotDR.R R/plotGeneQCs.R R/plotLibQC.R R/plotRLE.R R/plotSampleInfo.R R/prepareDecon.R R/standR-package.R R/sumBatchCorEval.R R/utils.R README.md

data/dkd_spe_subset.rda

inst/CITATION

inst/extdata/metadata.csv

man/addPerROIQC.Rd man/computeClusterEvalStats.Rd man/dkd_spe_subset.Rd man/drawPCA.Rd

man/figures/standR_sticker.png

man/figures/workflow.jpg

man/findBestK.Rd man/findNCGs.Rd man/geomxBatchCorrection.Rd man/geomxNorm.Rd man/plotClusterEvalStats.Rd man/plotDR.Rd man/plotGeneQC.Rd man/plotMDS.Rd man/plotPCAbiplot.Rd man/plotPairPCA.Rd man/plotRLExpr.Rd man/plotROIQC.Rd man/plotSampleInfo.Rd man/plotScreePCA.Rd man/prepareSpatialDecon.Rd man/readGeoMx.Rd man/readGeoMxFromDGE.Rd man/spe2dge.Rd man/standR-package.Rd tests/testthat.R tests/testthat/test-addQCstat.R tests/testthat/test-batchCorrection.R tests/testthat/test-geomx_import_data.R tests/testthat/test-normalisation.R tests/testthat/test-pcaOtherPlotting.R tests/testthat/test-plotDR.R tests/testthat/test-plotGeneQCs.R tests/testthat/test-plotLibQC.R tests/testthat/test-plotRLE.R tests/testthat/test-plotSampleInfo.R tests/testthat/test-prepareDecon.R tests/testthat/test-sumbatchCorEval.R vignettes/Quick_start.Rmd

DavisLaboratory/standR documentation built on Dec. 6, 2024, 9:55 p.m.

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