Files in DavisLaboratory/standR
Spatial transcriptome analyses of Nanostring's DSP data in R
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RUV4_upgrade.R
R/addQCstat.R
R/batchCorrection.R
R/geomx_import_data.R
R/normalisation.R
R/pcaOtherPlotting.R
R/plotDR.R
R/plotGeneQCs.R
R/plotLibQC.R
R/plotRLE.R
R/plotSampleInfo.R
R/prepareDecon.R
R/standR-package.R
R/sumBatchCorEval.R
R/utils.R
README.md
data/dkd_spe_subset.rda
inst/CITATION
inst/extdata/metadata.csv
man/addPerROIQC.Rd
man/computeClusterEvalStats.Rd
man/dkd_spe_subset.Rd
man/drawPCA.Rd
man/figures/standR_sticker.png
man/figures/workflow.jpg
man/findBestK.Rd
man/findNCGs.Rd
man/geomxBatchCorrection.Rd
man/geomxNorm.Rd
man/plotClusterEvalStats.Rd
man/plotDR.Rd
man/plotGeneQC.Rd
man/plotMDS.Rd
man/plotPCAbiplot.Rd
man/plotPairPCA.Rd
man/plotRLExpr.Rd
man/plotROIQC.Rd
man/plotSampleInfo.Rd
man/plotScreePCA.Rd
man/prepareSpatialDecon.Rd
man/readGeoMx.Rd
man/readGeoMxFromDGE.Rd
man/spe2dge.Rd
man/standR-package.Rd
tests/testthat.R
tests/testthat/test-addQCstat.R
tests/testthat/test-batchCorrection.R
tests/testthat/test-geomx_import_data.R
tests/testthat/test-normalisation.R
tests/testthat/test-pcaOtherPlotting.R
tests/testthat/test-plotDR.R
tests/testthat/test-plotGeneQCs.R
tests/testthat/test-plotLibQC.R
tests/testthat/test-plotRLE.R
tests/testthat/test-plotSampleInfo.R
tests/testthat/test-prepareDecon.R
tests/testthat/test-sumbatchCorEval.R
vignettes/Quick_start.Rmd
