PGDA

allele_richness | Calculate mean allele richness at all sampling levels |

calc_eh | Calculate expected heterozygosity |

calc_ld_stats | Calculate composite ld between markers |

calc_lng | Calculate LNG |

calc_maf_mr | Calculate the MAF and MR |

calc_plot_map_stats | Calculate and plot map stats |

coverage_by_chrom | Calculate mean allele richness at all sampling levels |

draw_rects | Craws rectangles for circliz graph |

load_genes | Loads gene info |

max_lengths | Calc genome and homoeologous set lengths from chromosomes |

plot_gaps_nbs_ld | Output figures based on map stats |

round_df | From:... |

snpgds_parse | Parse a gds file |

snpgds_sample_subset | Create a gds file that cotnains a subset of the sample from... |

snpgds_snp_subset | Create a gds file that contains a subset of the snps of... |

span_by_chrom | Calculate the length of each chrom, optionally subtract the... |

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