Man pages for DiDeoxy/PGDA
PGDA
| allele_richness | Calculate mean allele richness at all sampling levels |
| calc_eh | Calculate expected heterozygosity |
| calc_ld_stats | Calculate composite ld between markers |
| calc_lng | Calculate LNG |
| calc_maf_mr | Calculate the MAF and MR |
| calc_plot_map_stats | Calculate and plot map stats |
| coverage_by_chrom | Calculate mean allele richness at all sampling levels |
| draw_rects | Craws rectangles for circliz graph |
| load_genes | Loads gene info |
| max_lengths | Calc genome and homoeologous set lengths from chromosomes |
| plot_gaps_nbs_ld | Output figures based on map stats |
| round_df | From:... |
| snpgds_parse | Parse a gds file |
| snpgds_sample_subset | Create a gds file that cotnains a subset of the sample from... |
| snpgds_snp_subset | Create a gds file that contains a subset of the snps of... |
| span_by_chrom | Calculate the length of each chrom, optionally subtract the... |
