calc_ld_stats: Calculate composite ld between markers
In DiDeoxy/PGDA: PGDA
Description
Usage
Arguments
Value
Description
Calculates composite ld for the markers on each chromosome in a gds object,
returning a dist object and the LD between neighbouring markers
Usage
1
calc_ld_stats(gds, snp_data)
Arguments
gds
a gds object
snp_data
the parsed snp data of the gds object
Value
a list contianing the dist object and neighbouring lds for each
chromosome ordered by genome
DiDeoxy/PGDA documentation built on June 19, 2020, 5:38 a.m.
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Description Usage Arguments Value
Description
Calculates composite ld for the markers on each chromosome in a gds object, returning a dist object and the LD between neighbouring markers
Usage
1 | calc_ld_stats(gds, snp_data)
|
Arguments
gds |
a gds object |
snp_data |
the parsed snp data of the gds object |
Value
a list contianing the dist object and neighbouring lds for each chromosome ordered by genome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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