calc_ld_stats: Calculate composite ld between markers

Description Usage Arguments Value

Description

Calculates composite ld for the markers on each chromosome in a gds object, returning a dist object and the LD between neighbouring markers

Usage

1
calc_ld_stats(gds, snp_data)

Arguments

gds

a gds object

snp_data

the parsed snp data of the gds object

Value

a list contianing the dist object and neighbouring lds for each chromosome ordered by genome


DiDeoxy/PGDA documentation built on Nov. 12, 2019, 10:38 p.m.