Man pages for DiogoVeiga/maser
Mapping Alternative Splicing Events to pRoteins
| annotation-Maser-method | Retrieve annotation of splicing events from a maser object. |
| availableFeaturesUniprotKB | Query available human protein features in UniprotKB. |
| boxplot_PSI_levels | Boxplots of PSI distributions by splicing type. |
| counts-Maser-method | Retrieve raw read counts values from a maser object. |
| display | Visualization of splicing events annotation using an... |
| dotplot | Dotplot representation of splicing events. |
| filterByCoverage | Filter splicing events based on coverage. |
| filterByEventId | Filter splicing events based on event identifier and type. |
| geneEvents | Retrieve splicing events for a given gene. |
| granges-Maser-method | Retrieve genomic ranges of splicing events from a maser... |
| mapProteinFeaturesToEvents | Mapping of splice events to UniprotKB protein features. |
| mapTranscriptsToEvents | Mapping of splice events to Ensembl transcripts. |
| maser | Create a maser object by importing rMATS splicing events. |
| Maser-class | S4 class to represent splicing events imported from rMATS. |
| pca | Prinicipal component analysis of PSI distributions. |
| plotGenePSI | Boxplots of Percent spliced-in levels for gene events. |
| plotTranscripts | Mapping and visualization of Ensembl transcripts affected by... |
| plotUniprotKBFeatures | Mapping and visualization of UniprotKB protein features... |
| PSI | Retrieve PSI (percent spliced in) values from a maser object. |
| PSI-Maser-character-method | Retrieve PSI (percent spliced in) values from a maser object. |
| splicingDistribution | Proportion of events by splicing type. |
| summary-Maser-method | Retrieve rMATS stats of differential splicing from a maser... |
| topEvents | Filter splicing events based on false discovery rate and PSI... |
| volcano | Volcano plot of splicing events. |
