topEvents: Filter splicing events based on false discovery rate and PSI...

In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins

Description

Filter splicing events based on false discovery rate and PSI change.

Usage

topEvents(events, fdr = 0.05, deltaPSI = 0.1)

Arguments

events	a maser object.
fdr	numeric, FDR (False Discovery Rate) cutoff.
deltaPSI	numeric, absolute minimum PSI (Percent spliced-in) change

Value

a maser object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))

## To select all events with minimum 10% change in PSI, and FDR < 0.01 
hypoxia_top <- topEvents(hypoxia, fdr = 0.01, deltaPSI = 0.1)

DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.