counts-Maser-method: Retrieve raw read counts values from a maser object.
In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins
Description
Usage
Arguments
Value
Examples
Description
Retrieve raw read counts values from a maser object.
Usage
1
2
Arguments
object
a maser object.
type
a character indicating the splice type. Possible values
are c("A3SS", "A5SS", "SE", "RI", "MXE").
Value
a matrix.
Examples
1
2
3
path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
head(counts(hypoxia, "SE"))
DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.
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Description Usage Arguments Value Examples
Description
Retrieve raw read counts values from a maser object.
Usage
1 2 |
Arguments
object |
a maser object. |
type |
a character indicating the splice type. Possible values
are |
Value
a matrix.
Examples
1 2 3 | path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
head(counts(hypoxia, "SE"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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