splicingDistribution: Proportion of events by splicing type.
In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins
Description
Usage
Arguments
Value
Examples
Description
Proportion of events by splicing type.
Usage
1
splicingDistribution(events, fdr = 0.05, deltaPSI = 0.1)
Arguments
events
a maser object.
fdr
numeric, FDR (False Discovery Rate) cutoff.
deltaPSI
numeric, absolute minimum PSI (Percent spliced-in) change
Value
a ggplot object.
Examples
1
2
3
4
path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
splicingDistribution(hypoxia_filt)
DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.
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Description Usage Arguments Value Examples
Description
Proportion of events by splicing type.
Usage
1 | splicingDistribution(events, fdr = 0.05, deltaPSI = 0.1)
|
Arguments
events |
a maser object. |
fdr |
numeric, FDR (False Discovery Rate) cutoff. |
deltaPSI |
numeric, absolute minimum PSI (Percent spliced-in) change |
Value
a ggplot object.
Examples
1 2 3 4 | path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
splicingDistribution(hypoxia_filt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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