filterByCoverage: Filter splicing events based on coverage.
In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins
Description
Usage
Arguments
Value
Examples
Description
Filter splicing events based on coverage.
Usage
1
filterByCoverage(events, avg_reads = 5)
Arguments
events
a maser object.
avg_reads
numeric, average number of reads covering the splice event.
Value
a maser object.
Examples
1
2
3
path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.
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Description Usage Arguments Value Examples
Description
Filter splicing events based on coverage.
Usage
1 | filterByCoverage(events, avg_reads = 5)
|
Arguments
events |
a maser object. |
avg_reads |
numeric, average number of reads covering the splice event. |
Value
a maser object.
Examples
1 2 3 | path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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