Man pages for Djeppschmidt/mgrastr
Import, summarize, and format MG-Rast annotations for use in R
| ag.Class | Extract class |
| ag.Domain | extract domain |
| ag.family | Extract family |
| ag.Genus | extract genus |
| ag.Order | Extract Order |
| ag.Phylum | Extract phylum |
| ag.Species | extract species |
| ag.tax | aggregate taxonomy table |
| condense | condense |
| ConnStat | construct table of connectivity values |
| ConnStat2 | construct table of connectivity values |
| dendromap | parse single ontology into heirarchical table |
| DFTax | combine tables and condense |
| download.F | download function annotation |
| downloadFunc | download functions |
| download.O | download taxonomic data |
| downloadTaxa | download taxonomic data |
| extractT | parse single ontology into heirarchical table |
| filt | set filter for function abundance |
| FT.cor | function-correlation matrix |
| linmod | Linear model |
| loadFunc | load wrapper for many different samples |
| MeanNetval | transform count values |
| mg.load | load |
| netStat | construct table of network index values |
| plotNtwk | construct table of connectivity values |
| plotNtwk2 | plot networks |
| transform | transform count values |
