ConnStat2: construct table of connectivity values

In Djeppschmidt/mgrastr: Import, summarize, and format MG-Rast annotations for use in R

Description

constructs network based explicitly on number of expected edges. Challenge is in defining appropriate level of edges for interpretable topology. Most nodes have at least one highly significant correlation to another; thus with very few edges, we get all the nodes, and as we decrease significance threshold, the network fills out.

Usage

ConnStat2(list, num)

Arguments

x	phyloseq object
cat	categorical variable to subset phyloseq object

Examples

netstat()

Djeppschmidt/mgrastr documentation built on Aug. 9, 2019, 8:42 p.m.