loadFunc: load wrapper for many different samples

Description Usage Arguments Examples

View source: R/MG_RastPipeline.R

Description

load wrapper for many different samples

Usage

1
loadFunc(x, auth, ont, level, E, length, id, parallel)

Arguments

x

list of mg-rast accession numbers

auth

authentication code for mg-rast

ont

type of ontology. acceptable: Subsystems, COG, KO, NOG

level

level of ontology. acceptable values: 1, 2, 3, 4.

E

expected error value. default mg-rast is 5; (e^-5), larger numbers are more retrictive.

length

minimun number of bp to match query string. mg-rast uses 15

id

minimum percent match. mg-rast uses 60

parallel

logical; default is T

Examples

1

Djeppschmidt/mgrastr documentation built on Dec. 7, 2018, 8 a.m.