mg.load: load

In Djeppschmidt/mgrastr: Import, summarize, and format MG-Rast annotations for use in R

Description

submit function annotation query to mg-rast, get result url

Usage

mg.load(x, auth, ont, level, E, length, id)

Arguments

x	list of mg-rast accession numbers
auth	authentication code for mg-rast
ont	level of ontology. acceptable: Subsystems, COG, KO, NOG
level	level of ontology. acceptable values: 1, 2, 3, 4.
E	expected error value. default mg-rast is 5; (e^-5), larger numbers are more retrictive.
length	minimun number of bp to match query string. mg-rast uses 15
id	minimum percent match. mg-rast uses 60

Examples

load()

Djeppschmidt/mgrastr documentation built on Aug. 9, 2019, 8:42 p.m.