mg.load: load

Description Usage Arguments Examples

View source: R/MG_RastPipeline.R

Description

submit function annotation query to mg-rast, get result url

Usage

1
mg.load(x, auth, ont, level, E, length, id)

Arguments

x

list of mg-rast accession numbers

auth

authentication code for mg-rast

ont

level of ontology. acceptable: Subsystems, COG, KO, NOG

level

level of ontology. acceptable values: 1, 2, 3, 4.

E

expected error value. default mg-rast is 5; (e^-5), larger numbers are more retrictive.

length

minimun number of bp to match query string. mg-rast uses 15

id

minimum percent match. mg-rast uses 60

Examples

1
load()

Djeppschmidt/mgrastr documentation built on Dec. 7, 2018, 8 a.m.