Description Usage Arguments Examples
View source: R/MG_RastPipeline.R
submit function annotation query to mg-rast, get result url
1 |
x |
list of mg-rast accession numbers |
auth |
authentication code for mg-rast |
ont |
level of ontology. acceptable: Subsystems, COG, KO, NOG |
level |
level of ontology. acceptable values: 1, 2, 3, 4. |
E |
expected error value. default mg-rast is 5; (e^-5), larger numbers are more retrictive. |
length |
minimun number of bp to match query string. mg-rast uses 15 |
id |
minimum percent match. mg-rast uses 60 |
1 | load()
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