jobwatch: watch a _qsub_bed job by using _qreport_

In DrRes/jobwatcher: Build pipelines on HGC super-computer

Description

watch a qsubbed job by using qreport

Usage

jobwatch(x, sys_sleep = 60L, max_repeat = 2L, qsub_args = "",
  modify_req = TRUE, qrecall = FALSE, verbose = FALSE,
  debug = FALSE)

Arguments

x	A list of your job ID, the path of your qsub file, and the time you execute qsub or time before that.
sys_sleep	A numeric. qreport interval in seconds.
max_repeat	A integer. Total times of trying qsub the same file.
qsub_args	A character. Additional arguments for qsub/qrecall.
modify_req	A logical. When re-qsubbing, whether to add recommended requests to qsub_args
qrecall	A logical. Whether use qrecall -file instead of qsub when re-subbing your job.
verbose	A logical.
debug	A logical.

Value

Invisible. A list of your final job ID, the path of your qsub file, and the time of final qsub.

DrRes/jobwatcher documentation built on Aug. 29, 2019, 5:50 a.m.