write_and_qsub: write and _qsub_

In DrRes/jobwatcher: Build pipelines on HGC super-computer

Description

Deplicated. We recommend to use qsub. shorthand of save_and_qsub(make_qsubfile())

Usage

write_and_qsub(..., script_path, script_dir = NA_character_,
  name = NA_character_, first_line = binbash(),
  parallel = parallel_option(), arrayjob = arrayjob_option(),
  directory = directory_option(), use_bash_profile = TRUE,
  other_req = character(0), recursive = FALSE, add_time = TRUE,
  qsub_args = "")

Arguments

...	Your codes (default: bash codes). Each argument should be a character vector. Multiple arguments and multiple elements will be separated with a line break.
script_path	A character. The path to write a file.
script_dir	A character. It will concatenated with file_path..
name	A character
first_line	A character. It is written in the first line.
parallel	A character
arrayjob	A character
directory	A character
use_bash_profile	A logical. Whether source ~/.bash_profile or not.
other_req	A character. Other requirements for qsub
recursive	A logical. Whether make parent directory recursively when it does NOT exist.
add_time	A logical. Whether add the time you execute this function to path for unique naming.
qsub_args	Additional arguments for qsub.

Value

Invisible. A list of Job ID, the path you write your file to, and the time you execute this function.

DrRes/jobwatcher documentation built on Aug. 29, 2019, 5:50 a.m.