make_qsubfile: make a file suitable for _qsub_

Description Usage Arguments Value

View source: R/qsub.R

Description

make a file suitable for qsub

Usage

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make_qsubfile(..., name = NA_character_, first_line = binbash(),
  parallel = parallel_option(), arrayjob = arrayjob_option(),
  directory = directory_option(), use_bash_profile = TRUE,
  other_req = character(0))

Arguments

...

Your codes (default: bash codes). Each argument should be a character vector. Multiple arguments and multiple elements will be separated with a line break.

name

A character

first_line

A character. It is written in the first line.

parallel

A character

arrayjob

A character

directory

A character

use_bash_profile

A logical. Whether source ~/.bash_profile or not.

other_req

A character. Other requirements for qsub

Value

qsub script as a character. In order to write this in a file, use write or write_qsubfile.


DrRes/jobwatcher documentation built on Aug. 29, 2019, 5:50 a.m.